After your images have been imported to TrakEM2 and aligned (see here), the project needs to be organized in order to start the reconstruction. 1.Basically there a two columns: template and Project objects in the project window. You have to build up a template from where you can drop the specific templates to the project […]
Author: Stefan
Setting the maximum memory in Fiji
It is possible to adapt the memory settings in Fiji in order to release more RAM for the use of the software. However, keep in mind, that also the operating system needs memory (RAM) and if you maximize the memory settings, that no other software should run in parallel when using Fiji. How to edit […]
Aligning an image stack in TrackEM2
This a very brief, compact introduction on how to align image stacks in TrakEM2. 1.open Fiji (download: https://imagej.net/Fiji/Downloads) : choose File in the sidebar –>Import –> Image Sequence 2. Choose the folder with all your images (mac) or open the folder and click on the first image (PC) and select the open button below. 3. the following […]
How to open a Zip-Folder of Images in Fiji
…nothing easier than this: just drag and drop it onto the Fiji Sidebar…